Coronavirus phylogeny based on 2D graphical representation of DNA sequence
Identifieur interne : 004310 ( Main/Exploration ); précédent : 004309; suivant : 004311Coronavirus phylogeny based on 2D graphical representation of DNA sequence
Auteurs : Bo Liao [République populaire de Chine] ; Xuyu Xiang [République populaire de Chine] ; Wen Zhu [République populaire de Chine]Source :
- Journal of Computational Chemistry [ 0192-8651 ] ; 2006-08.
Descripteurs français
- KwdFr :
- MESH :
- analyse : ADN.
- génétique : ADN, Coronavirus, Génome viral, Pan troglodytes.
- Animaux, Coronavirus, Phylogénie, Séquence nucléotidique.
English descriptors
- KwdEn :
- MESH :
- chemical , analysis : DNA.
- classification : Coronavirus.
- genetics : Coronavirus, DNA, Genome, Viral, Pan troglodytes.
- Teeft :
- Animals, Base Sequence, Characteristic plot, Chem, Chem phys lett, Complete coronavirus genomes, Complete genome, Complete genomes, Comput chem, Coronavirus, Coronavirus genomes, Different parameters, Eigenvectors, Evolutionary distances, Evolutionary model, Genome, Geometric centers, Geometrical center, Graphical, Graphical representation, Liao, Matrix, Multiple alignment, Novel coronavirus, Phylip package, Phylogenetic, Phylogenetic relationships, Phylogenetic tree, Phylogeny, Respiratory syndrome, Sars, Sars coronavirus, Science foundation, Similar tendencies, Single gene sequences, Syst zool, Whole genome sequence, Wiley periodicals.
Abstract
A novel coronavirus has been identified as the cause of the outbreak of severe acute respiratory syndrome (SARS). Previous phylogenetic analyses based on sequence alignments show that SARS‐CoVs form a new group distantly related to the other three groups of previously characterized coronaviruses. In this aritcle, a new approach based on the 2D graphical representation of the whole genome sequence is proposed to analyze the phylogenetic relationships of coronaviruses. The evolutionary distances are obtained through measuring the differences among the two‐dimensional curves. © 2006 Wiley Periodicals, Inc. J Comput Chem 27: 1196–1202, 2006
Url:
DOI: 10.1002/jcc.20439
Affiliations:
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Le document en format XML
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Previous phylogenetic analyses based on sequence alignments show that SARS‐CoVs form a new group distantly related to the other three groups of previously characterized coronaviruses. In this aritcle, a new approach based on the 2D graphical representation of the whole genome sequence is proposed to analyze the phylogenetic relationships of coronaviruses. The evolutionary distances are obtained through measuring the differences among the two‐dimensional curves. © 2006 Wiley Periodicals, Inc. 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